Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR--AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY
3GP4 Chain:A ((2-46))
----------------------------SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDL---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41070 for 256 contacts (-160.4/contact) +
2D Compatibility (PS) -4797 + (NN) -856 + (LL) 4924
1D Compatibility (HY) 800 + (ID) 350
Total energy: -41349.0 ( -161.52 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: