Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
2OKD Chain:C ((22-131))
----------------PTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLK-GIDI--GGGVIDEDYRGNIGVILIN-NGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62804 for 698 contacts (-90.0/contact) +
2D Compatibility (PS) -12036 + (NN) -6266 + (LL) 1212
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -93644.0 ( -134.16 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2OKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKD-query.scw
PDB file :
Tito_Scwrl_2OKD.pdb
: