Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEVVRRGLQAHVTGRTITEVRVHHPRAVRRHDAGPADLTARLRGARINGTDRRGKYLWLTLNTAGVHRPTDTALVVHLGMSGQMLLGAV--PCAAHVRISALLDDGTVLSFADQRTFGGWLLADLVTVDGSVVPVPVAHLARDPLDPRFDCDAVVKVLRRKHSELKRQLLDQRVVSGIGNIYADEALWRAKVNGAHVAATLRCRRLGAVLHAAADVMREALAKGGTSFDSLYVNVNGESGYFERSLDAYGREGENCRRCGAVIRRERFMNRSSFYCPRCQPRPRK
4G4N Chain:A ((1-272))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIR-HPRDSEAFAARMIGQTVRGLERRGKFLKFLLD--------RDALISHLRAEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRP---PLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMK---------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ-----
General information:
TITO was launched using:
RESULT:
Template:
4G4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149812 for 2020 contacts (-74.2/contact) +
2D Compatibility (PS) -26688 + (NN) -10545 + (LL) 1168
1D Compatibility (HY) -14400 + (ID) 4450
Total energy: -204727.0 ( -101.35 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4G4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G4N-query.scw
PDB file :
Tito_Scwrl_4G4N.pdb
: