Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTFSHPHFFRSVLRWLQVGYPEGVPGPDRVALLSLLRSTPLTEEQIGEVVRHFTENGSPAVADRVIDRDEIAEFISEVTHHDAGPENIQRVAGILAAAGWPLAGVDVGESESGSDRAPASQG
1KHD Chain:A ((20-89))
------------------------------------LFKSQSMTQEESHQLFAAIVR--------GELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFP-------------------
General information:
TITO was launched using:
RESULT:
Template:
1KHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17649 for 367 contacts (-48.1/contact) +
2D Compatibility (PS) -6430 + (NN) -1622 + (LL) 2004
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -27097.0 ( -73.83 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1KHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KHD-query.scw
PDB file :
Tito_Scwrl_1KHD.pdb
: