Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANEPAIGAIDRLQRSSRDVTTLPAVISRWLSSVLPGGAAPEVTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPDVMPYTFGDNWFADAPAERQRQLQDATVAALATLHSIPNAQNTFSFLTQGRTSDTTLHRHFNWVRSWYDFAVE--------GIGRSPLLERTFEWLQSHWPDDAAAREPVLLWGDARVGNVLYRDFQPVAVLDWEMVALGPRELDVAWMIFAHRVFQELAGLATLPGLPEVMREDDVRATYQALTGVELGDLHWFYVYSGVMWACVFMRTGARRVHFGEIEKPDDVESLFYHAGLMKHLLGEEH |
3TM0 Chain:A ((21-261)) | ------------------------------------------------DTEGMSPAKVYKLVGE--------NENLYLKMTDSRYKG---TTYDVEREKDMMLWLEG--KLPVPKVLHFERH---DGWSNLLMSEADGVLCSEE--------Y-E--DEQSPEKIIELYAECIRLFHSIDISDCPY--TNS-------LDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKP----EEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDI---------GEE--QYVELFFDLLGIK--PDWEKIKYYILLDE-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -103297 for 1797 contacts (-57.5/contact) +
2D Compatibility (PS) -24809 + (NN) -9900 + (LL) 8496
1D Compatibility (HY) -9200 + (ID) 1550
Total energy: -140260.0 ( -78.05 by residue)
QMean score : 0.360
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