Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLA-ETVGSRLT--KPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVP-------YLDSLPDDLTDV-PVMVLDPMVATGGSMTHTLGLLISRGAADITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
1XTV Chain:C ((2-216))
-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
1XTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160009 for 1638 contacts (-97.7/contact) +
2D Compatibility (PS) -21738 + (NN) -4522 + (LL) 168
1D Compatibility (HY) -19600 + (ID) 3700
Total energy: -209401.0 ( -127.84 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1XTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XTV-query.scw
PDB file :
Tito_Scwrl_1XTV.pdb
: