Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
2YCM Chain:A ((4-223))
-------VSVILLAG---------MPKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTL---TLWEMQTPQVIKPELLKKGFELVKSE--GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
2YCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135675 for 1510 contacts (-89.9/contact) +
2D Compatibility (PS) -21078 + (NN) -6602 + (LL) 1976
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -179229.0 ( -118.69 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2YCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YCM-query.scw
PDB file :
Tito_Scwrl_2YCM.pdb
: