Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVVKINAIEVPAGAGPELEKRFAHRAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDEAFQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGGTGKTA
2PD1 Chain:A ((4-103))
TKLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALKF--GPSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSSPPNIEKVELLAAKLPAG---
General information:
TITO was launched using:
RESULT:
Template:
2PD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30378 for 672 contacts (-45.2/contact) +
2D Compatibility (PS) -11544 + (NN) -9043 + (LL) 516
1D Compatibility (HY) -800 + (ID) 850
Total energy: -52099.0 ( -77.53 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_2PD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD1-query.scw
PDB file :
Tito_Scwrl_2PD1.pdb
: