Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEIDTADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQLRPGSPAAPVVYTGPLDRYFDYAEGRLGWRTLDFEVEVLPIGDFQGTAVMNYNDLDVPYTRIHEFRHFHPERDYPTDKTVIMREYSRFAEDDDEPYYPINTEADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPHLRDGVPLLQDGA |
| 3KYB Chain:B ((6-376)) | ---------ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYINKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEK-GDSTIADPQTFEEQALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDLQREFI-----VDERTHYDHVFYSGPLDAFYGYQYGRLGYRTLDFK-KFIYQGDYQGCAVMNYCSVDVPYTRITEHKYFSPWEQH--DGSVCYKEYSRACEENDIPYYPIRQMGEMALLEKYLSLAENET---NITFVGRLGTYRYLDMDVTIAEALKTAE-VYLNSLTDNQPM----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KYB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178141 for 3007 contacts (-59.2/contact) +
2D Compatibility (PS) -40148 + (NN) -19349 + (LL) 1536
1D Compatibility (HY) -37200 + (ID) 8150
Total energy: -281452.0 ( -93.60 by residue)
QMean score : 0.499
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