Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------MAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQ-DNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV--------------------------------------------------------
3NOJ Chain:A ((2-236))
NTLIGKTGIVVRNIQRAELDSIDALGRLGVATVHEAQN-RKGLLSSKMRPIQQGTSLAGSAVTVLVAPGDNWMFHVAVEQCRPGDVLVVSPSSPCTDGYFGDLLATSLQARGVRALIVDAGVRDTQTLRDMGFAVWARAINAQGTVKETLGSVNLPVICGGQLINPGDIVVADDDGVVVVRRDECESTLVAAAERAGLEEEKRLRLAAGELGLDIYKMRERLEAKGLRYVDNIEDL
General information:
TITO was launched using:
RESULT:
Template:
3NOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104461 for 1342 contacts (-77.8/contact) +
2D Compatibility (PS) -17581 + (NN) -14297 + (LL) -140
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -148979.0 ( -111.01 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3NOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NOJ-query.scw
PDB file :
Tito_Scwrl_3NOJ.pdb
: