Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQSQTVTVDQQEI------LNRANEVEAPMADPPTDVPITPCELTAAKNAAQQL-----------VLSADNMREYLAA------GAKERQRLATSLRNAAKAYGEVDEEAATALDNDGEGTVQAESAGAVGGDSSAELTDTPRVATAGEPNFMDLKEAARKLETGDQGASLAHFADGWNTFNLTLQGDVKRFRGFDNWEGDAATACEASLDQQRQ------------------WILHMAKLSAAMAKQAQYVAQLHVWARREHPTYEDIVGLERLYAENPSARDQ------------ILPVYAEY-----QQRSEKVLTEYNNKAAL----------EPVNPPKPPPAIKIDPPPPPQ-----EQGLIPGFLMPPSDGSGVT-PGTGMPAAPMVPPTGSPGGGLPADTAAQLTSAGR--------EAAALSGDVAVKAASLGGGGGGGVPSAPLGSAIGGAESVRPAGAGDIAGLGQGRAGGGAALGGGGMGMPMGAAHQ----------GQGGAKSKGSQQEDEALYTEDRAWTEAVIGNRRRQDSKESK-- |
| 4YPL Chain:C ((5-542)) | LSDLEALRKKIEEVGMPEAVKTKALKELDRLERMQQGSP----EATVARTYLDWLTEVPWSKADPEVLDINHTRQVLDEDHYGLKDVKERILEYLAVRQLTQGLDVRNKAPILVLV--GPPGVGKTSLGRSIARSMN--RKFHRISLGGVRDEAEIRGHRRTYIGAMPGKLIHAMKQVGVINPVILLDQIDKMSS--DWRGDPASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEI----PGYTNMEKQAIARQYLWPKQVRESGMEGRIEVTDAAILRVISEYTREAGVRGLERELGKIARKGAKFWLEGAWEGLRTIDASDIPTYLGIPRYRPDKAETEPQVGTAQGLAWTPVGGTLLTIEVAAVPGSGKLSLTGQLGEVMKESAQAALTYLRAHTQDYGLPEDFYNKVDLHVHVPDGATPKDGPSAGITMATAIASALSRRPARM-DIAMTGEV-SLRGKVMPIGGVKEKLLAAHQAGIHKIVLPKDNEAQLEELPKEVLEGLEIKLVEDVGEVLEYLLLPEPTMPPVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YPL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 77314 for 3187 contacts (24.3/contact) +
2D Compatibility (PS) -46834 + (NN) -11496 + (LL) 780
1D Compatibility (HY) -10400 + (ID) 4400
Total energy: 4964.0 ( 1.56 by residue)
QMean score : 0.120
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