Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAP-GTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKA-KAGCPVSKVLNAKISLDASLDG
1ML8 Chain:A ((2-129))
-------------QARVKWVEGLTF-LGE--S-ASGHQ-ILMDG----NSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE----RLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLEKAVNITHSYEV
General information:
TITO was launched using:
RESULT:
Template:
1ML8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57638 for 832 contacts (-69.3/contact) +
2D Compatibility (PS) -13075 + (NN) -3797 + (LL) 532
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -79278.0 ( -95.29 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1ML8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ML8-query.scw
PDB file :
Tito_Scwrl_1ML8.pdb
: