Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKPGYRCAPINLGANTDPYQPLERERRLTRQVLEVLLRFRHPLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLSGNGIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF |
| 3C8F Chain:A ((1-245)) | -------SVIGRIHS-------------------------------------FESCGTVDGPGIRFITFFQGCLMRCLYC---HNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTAS----GG-----EAI-LQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDL--KQMNDEIHQNLVGVSN--HRTLEFAKYLANKNVKVWIRY-VVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK--------------------------LDGVKPPKKETMERVKGILEQYGHKVMF------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48924 for 2016 contacts (-24.3/contact) +
2D Compatibility (PS) -26531 + (NN) -17618 + (LL) 5900
1D Compatibility (HY) -3600 + (ID) 2000
Total energy: -92773.0 ( -46.02 by residue)
QMean score : 0.341
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