Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------------------MSKVVLASQLPNKRNAS----LAPGLKQRHVTMLSIAGV--------------IGAGLFVGSGHAIAAAGPAALLAYLIAGTLVVLVMRMLG---------EMAVASPD---TGSFSTYADRSIGRWAGFTIGWLYWWFWVLVIPLEAIAAAA--------------ILNAWFPAID----------------------TWIFALAVTFLLTVTN-LFSVARY-GEFEFWFALLKVIAIIAF----------IVL--------GAVAIVGGLPEREVSGLSSLMASHGGFVPNGYGAVLGALLTTMFSFMGTEIVTI--AA--------------AESKDPAKQITRATNSVIWRIGLFY--LVSIFI----VISIVPWNDPLLIQVG--------SYQRALELLDIP--HAKLIVDLVVLVAV-ASCLNSAIYTSSRMVFSLAKRGDAPSVLKLTNTAHVPRPAVLASTA-VGFLTTIVNYFAPEKVFTFLLASSGAVALLVYLVIAV-----------AQLRMRKQLQASGQPIEFRMWLYPWLTWAVILFIVA----ALSIMLIMPEHRHEVFATALLTIFTVCLGLLNARRKPRLGEDYAGKTARV--------- |
| 4OK4 Chain:A ((30-733)) | HPNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDAGGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSLGEHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESGVFLPMAKFLSVESPETFNKIHNLGTWAVAAVGMTGYVLGNDELVEISLMGLDKTGKAGFMKQLDKLFSPDGYYTEGPYYQRYALMPFIWFAKAIETNEPERKIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAIVYSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGDGADGDQGALSIHRLGEGHNHMALVAKNTSQG----MGHGHF--DKLNWLLYDNGNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDVTTADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHPIVVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQHLWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGANDPNYNLRQQQVLIRRVEK--AKQASFVSVLEPHGKYDGSLETTSGAYSNVKSVKHVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFSSVVV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -438825 for 3734 contacts (-117.5/contact) +
2D Compatibility (PS) -49110 + (NN) 473 + (LL) 132
1D Compatibility (HY) -14000 + (ID) 5200
Total energy: -506530.0 ( -135.65 by residue)
QMean score : 0.225
|
|
|