Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRPDSDAAPYEPVLEQTAQAWLVRLRGTPDAATRRAFEDWLAQRPAHAEAYARAEALWRLTEIPASRLAIEEADALEAYLRPRRASRNPRRWAYPLASVACLLAMLWLGGWWQPGDWLQDWRADYVAA----PGQVAEWKLADGSYLSLDAGSAVRVRIDGGQRRVELLRGAAAL-RVKRDALPFVVEAGEGRARVLGTEFEVRRGAGATRVTVLQGRVAVSAGTGAGAAEEVLGAGQQVGFADGKLGRPVAIDAAAALAWRQGWLSFYRRPLAEVLDELARYY------PGRILLLDDALGRQP--VSGSFRSDDPEAALKSLQAVLGYRQQILFGRLVVIR |
| 4XGC Chain:A ((38-388)) | -PCREREFENIYAFLEGKIQDQCMYVSGVPGTGKTATVTGVIRTLQEYLEINGM-----RLTEPRQAYVQIYKQLTGKTVSWEQAHALLEKRTTVLLVDELDILCNRRQDVVYNLLDWPTKLVVVTIANTMDLPERLGLTRLTFQPYSHKQLQEIVTARLGKGEAVQLVARKVAAVSGDARRALDICRRATEIADT--------------------AAVKCVTMLHVQQALAEMIASAKVQAIRNCSRMEQIFLQAIAAEVTRTGVEETTFMGVYQQVETIAAFMGVTFPPPGRALRLCSKLGAERLIISEHSRNDLFQKILLNVS-----ADDIHYALRV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57569 for 2214 contacts (-26.0/contact) +
2D Compatibility (PS) -31376 + (NN) -1944 + (LL) 3548
1D Compatibility (HY) -6800 + (ID) 2650
Total energy: -96791.0 ( -43.72 by residue)
QMean score : 0.291
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