Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDLN-IPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
1OKB Chain:B ((7-220))
------------TWRRELAAEFEKPYFKQLMSFVADERSR-HTVYPPADQVYSWTEMCDIQDVKVVILGQDPYHGPNQAHGLCFSVQKPVPPPPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSPLSAHRGFLGCKHFSKANGLLKLSGTEPINWRAL--
General information:
TITO was launched using:
RESULT:
Template:
1OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87600 for 1737 contacts (-50.4/contact) +
2D Compatibility (PS) -23064 + (NN) -11660 + (LL) 720
1D Compatibility (HY) -20800 + (ID) 5550
Total energy: -147954.0 ( -85.18 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_1OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKB-query.scw
PDB file :
Tito_Scwrl_1OKB.pdb
: