Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRASFVLLALSCAAPLLSLAEPLRFAGD-DGCPYLCPGTPQRPGYLVEALSQVLR---EPPHFDSLPWPRAVQMVRDGHRDGLVGA-YGL----DGLRVGSEPIGWVGLAFYTRHDSDWHYSGDASLLGQRLGLAQGYVNNPRFEAWRSQAGDDDLHLQVLGGERVLPRNLQKLLLGRIDVLLEDRDIIEHYLEHHPQLAGQIRRAGELP-----GRQPLHVGLSPHLPEVDARLAELDEGLRQLRREGTLKVLGERYRLSFE
3TQL Chain:A ((2-227))
---------------------DTIKFATEATYPPYVYMG-GQVEGFGADIVKAVCKQMQAVCTISNQPWDSLIPSLKLGKFDALFGGMNITTARQKEVDFT-DPYYTNSVSFIADKNTPL-TLSKQGLKGKIIGVQGGTTFDSYLQDSFG--N----SITIQR-YPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQN-GRR-EYVLIGKPVNDPNYFGKGVGIAVKKG---NQALLLKLNKALAAIKANGVYAAIVQKYF----
General information:
TITO was launched using:
RESULT:
Template:
3TQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100027 for 1636 contacts (-61.1/contact) +
2D Compatibility (PS) -22785 + (NN) -11561 + (LL) 2736
1D Compatibility (HY) -9600 + (ID) 1750
Total energy: -142987.0 ( -87.40 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_3TQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQL-query.scw
PDB file :
Tito_Scwrl_3TQL.pdb
: