Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPH-GV-VLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGATLAYREIQSDA-AG-RS--ERLSTVVLHRDDEGRLYWRHLQETFCG
3FF2 Chain:A ((4-110))
-----------NLETAKAMIAAYNA-QDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQ---QVGTYVLMREHVTRGPATDGSPLVEPFDVVAVYSFE-GDKCSRVEFIR----
General information:
TITO was launched using:
RESULT:
Template:
3FF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22705 for 672 contacts (-33.8/contact) +
2D Compatibility (PS) -10566 + (NN) -1549 + (LL) 2104
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -32066.0 ( -47.72 by residue)
QMean score : 0.238
(partial model without unconserved sides chains):
PDB file :
Tito_3FF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FF2-query.scw
PDB file :
Tito_Scwrl_3FF2.pdb
: