Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKK-HTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEH----FIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITIDTLSEDPDLAVKRIISYLETNQPA
1M7G Chain:D ((23-202))
---------------------QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATTGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGYL
General information:
TITO was launched using:
RESULT:
Template:
1M7G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106471 for 1387 contacts (-76.8/contact) +
2D Compatibility (PS) -19295 + (NN) -11138 + (LL) 960
1D Compatibility (HY) -13200 + (ID) 4300
Total energy: -153444.0 ( -110.63 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1M7G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M7G-query.scw
PDB file :
Tito_Scwrl_1M7G.pdb
: