Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLITL
4NG2 Chain:D ((16-181))
-ALVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAF------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98331 for 1267 contacts (-77.6/contact) +
2D Compatibility (PS) -17818 + (NN) -6356 + (LL) 6076
1D Compatibility (HY) -23600 + (ID) 8300
Total energy: -148329.0 ( -117.07 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4NG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NG2-query.scw
PDB file :
Tito_Scwrl_4NG2.pdb
: