Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNH--IGTVHAIALCNAAELAAGTMTDASIPA-------------GHRWIPRGMTVEYLAKATG-DVRAVADGSQIDWQAT-GNLVVPVVAYVDD-KPVFRAEITMYVSQA
3E8P Chain:A ((19-163))
-----------VLKRVAEVFDQHVPFHNLLGLDIKRYDIDGVEVAINMKPELIGNIHQQILHGGVTATVLDVVGGLTAFAGLVASRDDWTIEELQQRLQTLGTIDMRVDYLRPGRGQIFTGTGSVI----RAGNRVSVCRMELHNEQGTHIAFGTGTYMVG--
General information:
TITO was launched using:
RESULT:
Template:
3E8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26644 for 880 contacts (-30.3/contact) +
2D Compatibility (PS) -12654 + (NN) 603 + (LL) 2232
1D Compatibility (HY) 2800 + (ID) 350
Total energy: -34013.0 ( -38.65 by residue)
QMean score : 0.141
(partial model without unconserved sides chains):
PDB file :
Tito_3E8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8P-query.scw
PDB file :
Tito_Scwrl_3E8P.pdb
: