Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAG--LLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAA---KSEISLKNSCLVAQSAAGQSFRLDTV----DEELTADTLKPGASVEGDAIFASEDDAVYGASLVRL--------SDRCK---
2Y9W Chain:C ((9-150))
------LDLPGTRILNGANWANNSATSGTLIIFDQSTPGQ-DADRWLIHNYLDGYKIFNMGSNNWASVSRGNTVLGVSEFDGQTCKWSIEYSGNGEEFWIRVPREG---GGGAVWTIKPASSQGPTTVFLDLLKETDPNQRIKFAV
General information:
TITO was launched using:
RESULT:
Template:
2Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20482 for 799 contacts (-25.6/contact) +
2D Compatibility (PS) -11931 + (NN) 3042 + (LL) 1188
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -34133.0 ( -42.72 by residue)
QMean score : 0.065
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9W-query.scw
PDB file :
Tito_Scwrl_2Y9W.pdb
: