Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLHIDSSILGDASASRQLSAELVQAWRQNEDGLDVTYRDLAADAVAHFSALTLAAGSTP-AELRDAALKHEVAVGEEVLEEFLAADVVVIGAPMYNFTISSQLKAWIDRIAVAGKTFRYTENG---PVGLAGDKKVVIVSTAGGVHAGQPTGAAH---EGYLRTVLGFFGITDIEVVRAEGLAYGEEPRTQAIAAARRQIAGQFAAA
4N65 Chain:B ((3-186))
-RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFV---QYRPL-LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGDSCDEAEQRLLALAR-----------
General information:
TITO was launched using:
RESULT:
Template:
4N65.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85932 for 1301 contacts (-66.1/contact) +
2D Compatibility (PS) -18803 + (NN) -9573 + (LL) 612
1D Compatibility (HY) -14800 + (ID) 2850
Total energy: -131346.0 ( -100.96 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4N65.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N65-query.scw
PDB file :
Tito_Scwrl_4N65.pdb
: