Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRCRNCGERPASEGHICMVCKRRSDIDPYKALIAMALLVYCGVSLAAYLKPHMPAPPPTAGSSVQPAEELAQRARQATLEQRGI
2K4F Chain:A ((1-57))
CSKNRKAKAKPVTRG----------------------------TGAGSRPRGQNKERPPPVPNPDYEPIRKGQRDLYSGLNQRAV
General information:
TITO was launched using:
RESULT:
Template:
2K4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -421 for 262 contacts (-1.6/contact) +
2D Compatibility (PS) -5714 + (NN) -5019 + (LL) 2604
1D Compatibility (HY) 2800 + (ID) 500
Total energy: -6250.0 ( -23.85 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_2K4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4F-query.scw
PDB file :
Tito_Scwrl_2K4F.pdb
: