Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQ------ACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLPA
1K3K Chain:A ((1-146))
MDEDVLPGEVLAIEGIFMACGLNEPEYLYHPLLSPIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILTFGSFVAQKLSN-EPHLRDFALAVLPAYAYEAIGPQWFRAR--GGWRGLKAYCTQVLT-
General information:
TITO was launched using:
RESULT:
Template:
1K3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35634 for 942 contacts (-37.8/contact) +
2D Compatibility (PS) -14478 + (NN) -13979 + (LL) 500
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -68791.0 ( -73.03 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1K3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K3K-query.scw
PDB file :
Tito_Scwrl_1K3K.pdb
: