Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
4IIN Chain:D ((30-268))
-KNV-LITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIK-MKTEDFHHVIDNNLTSAFIGCREALKVMSK---SRFGSVVNVASIIGERGNMGQ-TNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIET------------DYVK-NIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGG-
General information:
TITO was launched using:
RESULT:
Template:
4IIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115220 for 1956 contacts (-58.9/contact) +
2D Compatibility (PS) -24863 + (NN) -10877 + (LL) 548
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -171112.0 ( -87.48 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_4IIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IIN-query.scw
PDB file :
Tito_Scwrl_4IIN.pdb
: