Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------MPTAKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRDLGHNDRPSR-----
2LJK Chain:A ((1-117))
GSMSGEPGQTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGI--EIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNG-ETLEKITNSRPPCVIL
General information:
TITO was launched using:
RESULT:
Template:
2LJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28669 for 586 contacts (-48.9/contact) +
2D Compatibility (PS) -10667 + (NN) -12323 + (LL) 124
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -56635.0 ( -96.65 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_2LJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LJK-query.scw
PDB file :
Tito_Scwrl_2LJK.pdb
: