Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLIEVRDLSKTFTLHQQQGVVLNVLRGLNFNVAGGECLVLHGRSGAGKSTLLRTLYGNYL--PAGGSIRLRHAGDWLELV-------GAEPREVLAVRRQTLGYVSQFLRVIPRVATLDVVME-PALARGWSRDSAELRARSLLARLNIPERLWQLAPGTFSGGEQQRVNIARGFMVEWPILLLDEPTASLDEANRQVVLELIGEAKAAGAALIGIFHDRAAREAVASRYLDMSQELSRQEQAHVV
1B0U Chain:A ((5-228))
--NKLHVIDLHKRYGGHE-------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIVN--GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ-----------
General information:
TITO was launched using:
RESULT:
Template:
1B0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133896 for 1701 contacts (-78.7/contact) +
2D Compatibility (PS) -22994 + (NN) -9275 + (LL) 2052
1D Compatibility (HY) -16800 + (ID) 3700
Total energy: -184613.0 ( -108.53 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1B0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B0U-query.scw
PDB file :
Tito_Scwrl_1B0U.pdb
: