Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD
2DMX Chain:A ((8-74))
--MANYYEVLGVQAS--ASPEDIKKAYRKLALRWHPDKNPDN----KEEAEKKFKLVSEAYEVLSDSKKRSLYDR--------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15993 for 415 contacts (-38.5/contact) +
2D Compatibility (PS) -7475 + (NN) -6886 + (LL) 10048
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -22306.0 ( -53.75 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2DMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DMX-query.scw
PDB file :
Tito_Scwrl_2DMX.pdb
: