Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MNPLYRAAIHQLFLALDLPT-PNDEESVLSLQVGPHLCHLAEH--PTDHLLMFTRL---EGQGDATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR--
4G6T Chain:A ((1-128))
PVDMSNLFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPHKDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWREA
General information:
TITO was launched using:
RESULT:
Template:
4G6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44464 for 747 contacts (-59.5/contact) +
2D Compatibility (PS) -12995 + (NN) -7865 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -70624.0 ( -94.54 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4G6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G6T-query.scw
PDB file :
Tito_Scwrl_4G6T.pdb
: