Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDWGFSKLYERLNHEMEEETQHADALLRRILLLEGTPRMRP-DDIHPGTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDHAYWLEQQLGLIARMGLENYLQSQI
1SOF Chain:G ((1-154))
MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLE-DILESEEDHIDWLETQLDLIDKIGLENYLQSQM
General information:
TITO was launched using:
RESULT:
Template:
1SOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59206 for 1134 contacts (-52.2/contact) +
2D Compatibility (PS) -17352 + (NN) -15454 + (LL) 144
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -110468.0 ( -97.41 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1SOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SOF-query.scw
PDB file :
Tito_Scwrl_1SOF.pdb
: