Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAA--CKAAGGDARAYVCNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSI-SRAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIFEN--DYYTGRVLELDGGLRL |
| 2PNF Chain:B ((3-247)) | IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGER-AKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLR--------MSLLDWEEVLKVNLTGTFLVTQNSLRKMIK-QRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117463 for 2034 contacts (-57.7/contact) +
2D Compatibility (PS) -25688 + (NN) -5782 + (LL) 968
1D Compatibility (HY) -20400 + (ID) 5100
Total energy: -173465.0 ( -85.28 by residue)
QMean score : 0.534
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