Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTVKTVRELRAAVARARSEGKRIGFVPTMGNLHAGHAALVKKAGERADFVVVSIFVNPLQFGPSEDLDTYPRTLAADQERLLEAGCHLLFTPTVEEMYPD--GMDGQTRIHVPGVSEGLCGASRPGHFEGVATVVSKLLNMVQPDLALFGEKDFQQLAVIRKLVRDLNLPVQIFGEPTVRAADGLALSSRNGYLDEQQRAAAPAIYRT------LRQLGERIRAGAEDFPALLADARQALEQAGLRPDYLEIREPISLRPGVPGDRQLVILAAAYLGSTRLIDNLSVHLD
3AG6 Chain:B ((5-219))
---ITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGID----VKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGER---------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113516 for 1563 contacts (-72.6/contact) +
2D Compatibility (PS) -23420 + (NN) -18171 + (LL) 5136
1D Compatibility (HY) -20400 + (ID) 5300
Total energy: -175671.0 ( -112.39 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3AG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AG6-query.scw
PDB file :
Tito_Scwrl_3AG6.pdb
: