Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHY-QIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
4HMZ Chain:D ((13-177))
--------------EPVIHSDHRGRSHEWFRGESFRQAFGHDFPVAQVNVAVSHRGALRGIHYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVYLCSSGYAPAREHSVNPLDPDLGIAWPDDIEPLLSDRDENAPTLATAE---
General information:
TITO was launched using:
RESULT:
Template:
4HMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48888 for 1206 contacts (-40.5/contact) +
2D Compatibility (PS) -16931 + (NN) -3428 + (LL) 1628
1D Compatibility (HY) -7600 + (ID) 3000
Total energy: -78219.0 ( -64.86 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_4HMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HMZ-query.scw
PDB file :
Tito_Scwrl_4HMZ.pdb
: