Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQSTVQGHAGRLVFGLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFTAWKQMGEQRKLQEGTYVMLAGPNFETVAESRLLKMLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILMESIPLPDRGS
3GB9 Chain:B ((23-307))
MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST-----GRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITDKVIMDYE------------AGKQAAQKLEQFVSILMASIPLP----
General information:
TITO was launched using:
RESULT:
Template:
3GB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -211686 for 2236 contacts (-94.7/contact) +
2D Compatibility (PS) -28754 + (NN) -14846 + (LL) 1128
1D Compatibility (HY) -37200 + (ID) 11300
Total energy: -302658.0 ( -135.36 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3GB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GB9-query.scw
PDB file :
Tito_Scwrl_3GB9.pdb
: