Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSVC----DISEDGLAACKPSVT----KPDPVEPPS---VDCCKAVSGANFTCLC---------------SYKNSYLLPYL-GIDPDLAMAL------PSKCNLSTAV--PSC-----
1BEA Chain:? ((5-120))
--SCVPGWAIPHNPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFAATLVTEAECNLATISGVAECPWILG
General information:
TITO was launched using:
RESULT:
Template:
1BEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27350 for 396 contacts (-69.1/contact) +
2D Compatibility (PS) -8051 + (NN) -4726 + (LL) 164
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -43763.0 ( -110.51 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1BEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BEA-query.scw
PDB file :
Tito_Scwrl_1BEA.pdb
: