Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNVSGQSQGYYDSNVLLFNQQNQKF--QVFLLGKDENKYKEKTH-GLDVFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSID-EFFFIQKEEVSLKELDFKIRKLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
4DXF Chain:B ((19-204))
---------------------------------------------LRAYYTKPSLEFKNEIGIILKKW-TTIRFMNVVPDYFIYKIALVGKDDKKYGEGVHRNVDVFVVLEENNYNLEKYSVGGITKSNSKKVDHK---AGVRITKEDNKGTISHDVSEFKITKEQISLKELDFKLRKQLIEKNNLY-GNVGSGKIVIKMKNGGKYTFELHKKLQENRMADVIDGTNIDNIEVNIK
General information:
TITO was launched using:
RESULT:
Template:
4DXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50240 for 1373 contacts (-36.6/contact) +
2D Compatibility (PS) -19522 + (NN) -2275 + (LL) 4200
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -85787.0 ( -62.48 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_4DXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DXF-query.scw
PDB file :
Tito_Scwrl_4DXF.pdb
: