Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLISIAFLLVLCLLNYSSFRMLKSFLTLKKISRYAYLGFFILLSAGEATFVFYRNVMPSHLFVLTSACSFVSFIAFVFSLSFYGFSYSVEKIDFLPSRRKGLKNFLRIGFYLALLGYFWRGFYEGLARPKIKETPIYLDKL---DKELKIILLTDMHVGSLLQKDFVNYIVEEVNQKEVDMVLIGGDLVDENIE------KVKSFLLPLNNLKSTHGTFYVPGNHEYYHGIE-----PILSFLNTLDMT-----ILGNECVHL--GGINLCGVYDYFAR-KRQDFAPDIDKALKKR--DSSKPTILLAHQPKQIR----------------SLKESHSIDLVLSGHTHAGQIFPF-SLLVKLAQTYLHGLYKHSGTTQIYVSSGAGYWGIPLRFLAPSEIAYLRLLPKNQA |
2QFP Chain:A ((106-355)) | -------------------------------------------------------------------------------------------------------------------------------------FSFITPPQTGLDVPYTFGLIGDLGQSFDSN-TTLSHY--ELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVK-DQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98058 for 1563 contacts (-62.7/contact) +
2D Compatibility (PS) -21985 + (NN) -4052 + (LL) 12028
1D Compatibility (HY) -3600 + (ID) 1850
Total energy: -117517.0 ( -75.19 by residue)
QMean score : 0.383
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