Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------------------MTLSQALNKAKKELSPKGFRGGLESEILLGFVLQKERVFLHTHEHLEL---SHEEETRFFELVGKRLNDC-PIEYLLGSCDFYGRSFFVNEHVLIPR-------------------PETEILVQKALNIISQYHLKEIGEIGIGSGCVSVSLALENPNLSIYASDISPKALEVALKNIERFCLKERVFLKQ---TRLWDHMPTIEMLVSNPPYIARNYPLEKSVLKEPHEALFGGVKGDEILKEIVFLAAKLKIPFLVCEMGYDQLKSLKECLEFCGYDAEFYKDLS--GFDRGFVGVLKSFLR |
| 3TM4 Chain:A ((1-370)) | MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGSMIPDLYMKFFNELAKV---------LEKRGVFIT--------------TEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117616 for 1942 contacts (-60.6/contact) +
2D Compatibility (PS) -26693 + (NN) -842 + (LL) 1376
1D Compatibility (HY) -5600 + (ID) 2100
Total energy: -151475.0 ( -78.00 by residue)
QMean score : 0.317
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