Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRYDCLNPIPFIRKFMPLSCLHPFGPFETP---KEPALNNPLLKAHSSDKICLLGPMKSGKTTFALKLAKGFK---NPVYINCNDMRLNQ----NILSSWLLKWHLEK--KMDLLILDRIERLDFSLPKLPKIVLIPNYLSHITAPNFSLCYALGLNFKEYISFFKPNTP----KNTLFNRFLRDGNALDSLFTENEQEKILKKQENIQLAFQA-----YAPLMAKICS--YQSKFVSAFYLYTQLKKELKTSKDTLYKLLHALEKQRIIFLAPNFENHKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNYELYAHDNGIFILRNPTSKLALIAHAFPTPHFLEKQLLWCHKHGFLKIAVVSINAPISANNPPYKHLNFIDFSLDIQSILV |
3TUI Chain:C ((23-247)) | ---------------HMIK-LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL-PLELDNTPKDEVK------RRVTE--LLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALAS--NPKVLLCD-QA----------TSALDPATTRSILELLKDINRRLGLTILLITHEMDV-V--------KRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYV------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TUI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -92736 for 1594 contacts (-58.2/contact) +
2D Compatibility (PS) -20594 + (NN) -1269 + (LL) 2992
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -117557.0 ( -73.75 by residue)
QMean score : 0.215
|
|
|