Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQEGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH---
2K13 Chain:X ((1-103))
---EER------------EDCWTFYANRKYTDFDKSFKKSSDLDECKKTCFKTEYCYIVFE-DTVNKECYYNVVDGEELDQEKFV-------VDENFTENYLTDCEGKDAGNAAGTGDESDEVDED
General information:
TITO was launched using:
RESULT:
Template:
2K13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5668 for 699 contacts (-8.1/contact) +
2D Compatibility (PS) -10576 + (NN) 712 + (LL) 2740
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -17342.0 ( -24.81 by residue)
QMean score : 0.136
(partial model without unconserved sides chains):
PDB file :
Tito_2K13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K13-query.scw
PDB file :
Tito_Scwrl_2K13.pdb
: