Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -------------------------------------------MIKTKFSDPLEQLAKKRK---RKTLFKTVVLALIT--------VLLVVGIAFKGFTYLTSKNGQKTYHNFELLSEIAYPN---ISYDSLYY---QPSGQFTGKVHADRFKDIDGVQIPYSSFEENYSISGTFGTNADEKSEKNGLYDRGTRQKVPQFFNKNVKYKKGEAKT-----TPTNDLKYVNKLNNDLIEIAITFDKSYSYKEIKTMI-PNNIKQNWLWIGTSTELDTSYWPT-----KYQFGTDPETLNTPQIFIDKIKENLKGNSKVYFNNINIYSDLEKYAKKYDKVNNSDKLKFSGIILTGKAEN----FKQLKEKEWVHASSIGANIE---------YKPYYKLDKE------ |
4PG7 Chain:A ((20-446)) | HMKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILVRDKSKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNKKHVITANKDLLAVHLKLLEDLAEENGVALKFEASVAGGPNNISKFMGILNGTSNFILSKMTKEQTTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVIKLNDVKRRGISGVTLTDINVADQLG---YKIKLIGKGIYENGKVNASVEPTLIDKKHQLAAVEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESTLPPHFELKTDKTREMEKSNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDNQSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PG7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 62452 for 2224 contacts (28.1/contact) +
2D Compatibility (PS) -31840 + (NN) 6812 + (LL) 20
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: 26994.0 ( 12.14 by residue)
QMean score : 0.131
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