Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANDWKKSARGLALMTLEEVFDKGAYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIVDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDLS-QKQTIKETLN---VR-DSHIAETALVADS--GNFASTSFFQDGLITIQDESSQLVAPTLKVSGNDQVLDACSAPGGKTSHIASYLT-TGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASKAHEYF--LEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHPNFEQVELSHTQ---E---DIVKRGCISISPEQYHTDGFFIGQVKRIL |
| 3AJD Chain:A ((9-274)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN-TIIINADMRKYKDYLLKNEIFFDKILLDAPCS----------------EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPP---NEPFFIAKLRKI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102584 for 1963 contacts (-52.3/contact) +
2D Compatibility (PS) -25208 + (NN) -6487 + (LL) 16768
1D Compatibility (HY) -15200 + (ID) 3350
Total energy: -136061.0 ( -69.31 by residue)
QMean score : 0.484
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