Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------MNYKTIKS--DGIVE-EEIKKSRFICHLKRVESEEEGRNYITQIKKAHYKAN----HSCSAMVIGEKGDIKRSSDDG---EPSGTAGIPMLTVLEK-QGLTNVVAVVTRYFGGIKLGAGGLIRAYSGSVANTIKE-IGVVEVKEQIGIRIQLTYPQYQTFDNFLKEHHLQEFETEFLEAVTCKIYVDPKEFEHTITNLTEFYQGKALLT-----EEGSQIVEIPFKAETDK------------------------------- |
| 1NVM Chain:B ((1-312)) | MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALATAERMAQSMLNA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31083 for 1553 contacts (-20.0/contact) +
2D Compatibility (PS) -22275 + (NN) 3689 + (LL) 0
1D Compatibility (HY) 800 + (ID) 1250
Total energy: -50119.0 ( -32.27 by residue)
QMean score : 0.177
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