Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVVFLKILVPLVSLVFLISLGITILAGVLGAVGGSQSNCTIEVVTSTSTDSSISSGDGSIDSFVKEHKEAYILSWKAGGFLPSASITQTMIENGFNFTNPNGTSLWQAHNMGGVKTSSKSNFPVTLATYGQDSVDLSGTKPGARVGDGTGGAYTWFSSYDAGIVGKAEFMAHQTLYTKAINNIDGIATLSAIADGGWATDGTYKTKLIDMYHKLGKTYEWLDKEAISAHGDKPYKATTASAGDAGLSDIFTSNSKDCSDSSSGGATDGTGTVPADAIAWGYRPDNLPESLKQYIIDPKSLGMAYANSSGWFNPGSDYLAGQCVNLTISLGNHLWGHSGSVSGNGKDQAGAWANIFGNSVKTTPKRGAIFSTQNGGGGYGHTGIVCHVFENGSILIVEQNTPLSGADYFKKSYTWNYRIW-TPAQQKAEVISFAYPYGKEPKLGN |
4CGK Chain:A ((42-392)) | ----------------------------------------------------SNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITE----------------AISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAAELSLAAEKA----TAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANTNLTAQVQAVSESAAAPVRAKVRPT-YSTNASSYPIGECTWGVKTLAPW----AGDYWGNGAQWATSAAAA-GFRTGSTPQVGAIACWNDGG--YGHVAVVTAVESTTRIQVSESN-------YAGNRTIGNHRGWFNPTTTSEGFVTYIYAD-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 17343 for 2254 contacts (7.7/contact) +
2D Compatibility (PS) -35847 + (NN) 2121 + (LL) 4396
1D Compatibility (HY) 6800 + (ID) 2950
Total energy: -8137.0 ( -3.61 by residue)
QMean score : 0.056
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