Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTISNQELTLTPLRGKSGKAYIGTYPNGERVFVKYNTT----------PILPALAKEQ-IAPQLLWARRTSNGDMMSAQEWLDGRTLTKEDM----GSKQIIHILLRLHKSRPLVNQLLQLGYKIENPYDLLMDWEKQTPIQIRE---------NTYLQSIVTELKRSLPEFRTEVATIVHGDIKHSNWVITTSGLIYLVDWDSVRLTDRMYDVAYILSHY---IPQKHWKDWLSYYGYKDNEKVWSKIIWYGQFSYLSQIIKCFDKRDMEHVNQEIYELRKFRELIKKHNAS |
| 1ND4 Chain:A ((28-263)) | -----------TIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVT-EAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQ------AKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPD--GEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAA--PDSQRIAFYRLLDEFF---------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1ND4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -111352 for 1557 contacts (-71.5/contact) +
2D Compatibility (PS) -21470 + (NN) -4244 + (LL) 4704
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -139162.0 ( -89.38 by residue)
QMean score : 0.327
|
|
|