Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHRIDRVGMEIKREVNEILRLRVNDPRVQDVTITDVQMLGDLSMAKVFYTIHSTLASDNQKAQIGLEKATGTIKRELGKNLTMYKIPDLQFVKDESIEYGNKIDEMLRNLDKKD
1PA4 Chain:A ((6-101))
-----KERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYN--REQIDRVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28046 for 665 contacts (-42.2/contact) +
2D Compatibility (PS) -9659 + (NN) 1636 + (LL) 1496
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -40473.0 ( -60.86 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_1PA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PA4-query.scw
PDB file :
Tito_Scwrl_1PA4.pdb
: