Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQ----GDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGN-KKVQMIPQKDLQKITGYIHGANNPIGIRQ--KHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
1VKI Chain:A ((17-169))
----SRKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLV
General information:
TITO was launched using:
RESULT:
Template:
1VKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47351 for 1093 contacts (-43.3/contact) +
2D Compatibility (PS) -15245 + (NN) 207 + (LL) 308
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -67681.0 ( -61.92 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1VKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKI-query.scw
PDB file :
Tito_Scwrl_1VKI.pdb
: