Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLFLIMMERAGLIILLAYAFVHIPFIKQTLKQPELKKHQYILLILFSLFAIISNFTGVEIQSDLSIIPQTLNHIADQSSVANTRVLTIGVSGLIGGPIVGIIVGLLSVFVRYLQGGLAPHIYVISSLLIGLCSGLSGNYLRKNYNKIRVLDAMVVGFGMEILQMICILIFSVDFNQALRLVSFISMPMILSNTLGLGIFISIISSTQKLEEHAKAFQTHQVLELANLTLPYLRKGLTTESCQPVAEIIHKHMDVSAVSLTSQSAILAYVGDGADHHLPNTQILTKLAKRAIDTGKVSVATDKSEIECDHKNCPLSSAIVIPLHIHDVIVGTLKLYFSDAQHMTYVDRQLAEGLGNIFSTQLALGQAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEKARKLVQDFSKVIRANLQRAKQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPP----FTLQVLIENSYKHAFKHVNKNNQLKVTIAR----------NNDRLHIIVQDNGIGIPKEKLITLGKKTQISKQGSGTAIENLVRRLNIIYDGQASLKFESNDSGTCAIVNIPIKN |
1R62 Chain:A ((198-348)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIHKVAERVVTLVSME---LPDNVRLIRDYDP-SLPELAHDPDQIEQVLLNIVRNALQALG---PEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGI-------------------GLGLSIARNLIDQHSG---KIEFTSWPGHTEFSVYLPIR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R62.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61888 for 846 contacts (-73.2/contact) +
2D Compatibility (PS) -12177 + (NN) -2760 + (LL) 37792
1D Compatibility (HY) -2400 + (ID) 1300
Total energy: -42733.0 ( -50.51 by residue)
QMean score : 0.404
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