Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKNTWKKLLVSTAALSVVAGGAIAATHSNSVDAASKTTIKLWVPTD-SKASYKAIVKKFEKENKGVTVKMIESNDSKAQENVKKDP--SKAADVFSLPHDQLGQLVESGVIQEIPEQYSKEIAKNDTKQSLTGAQYKGKTYAFPFGIESQVLYYNKTKLTADDVKSYETITSKGKFGQ-----QLKA--ANSYVTGPLFLSVGDTLFGKSGED--AKGTNWGNEAGVSVLKWIADQKKNDGFVNL-TAENTMSKFGDGSVHAFESGPWDYDAAKKAVGEDKIGVAVYPTMKIGDKEVQQKAFLGVKLYAVNQAPAGSNTKRISASYKLAA-YLTNAESQKIQFEKRH-IVPANSSIQSSDSVQKDELAKAVIEMGSSDKYTTVMPKLSQMSTFWTESAAILSDTYSGKIKSSDYLKRLKQFDKDIAKTK |
| 1HSJ Chain:A ((3-370)) | -----------------------------------EEGKLVIWINGDKGYNGLAEVGKKFEKD-TGIKVTVEHP--DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKA--FQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN-PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS-K-VNYGVTVLPTFKG-QPS---KPFVGVLSAGINAASP-----NKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE-EE-LAKDPRIAATMEN---AQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALAAAQTNAAAEFMSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HSJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30546 for 3111 contacts (-9.8/contact) +
2D Compatibility (PS) -37746 + (NN) -11266 + (LL) 2784
1D Compatibility (HY) -13200 + (ID) 4150
Total energy: -94124.0 ( -30.26 by residue)
QMean score : 0.384
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